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| 2007 | | | | Publications | - Persson, A., Hober, S. & Uhlén, M. (2006) A human protein Atlas based on Antibody Proteomics, Current Opinion in Molecular Therapeutics, 8, 185-190
- Larsson, K., Wester, K., Nilsson, P., Uhlén, M., Hober, S., & Wernéus, H. (2006) Multiplexed PrEST immunization for high-throughput affinity proteomics, J Immunol Methods, 315, 110-120
- VIksna J, Celms E, Opmanis M, Podnieks K, Rucevskis P, Zarins A, Guha Neogi S, Krestyaninova M, McCarthy MI, Brazma A, Sarkans U. PASSIM - an open source software system for managing information in biomedical studies. BMC Bioinformatics 2007 Feb 9;8:52 .
- Klimcakova E, Moro C, Mazzucotelli A, Lolmède K, Viguerie N, Galitzky J, Stich V, Langin D. Profiling of adipokines secreted from human subcutaneous adipose tissue in response to PPAR agonists. Biochem Biophys Res Commun. 2007 Jul 6;358(3):897-902. Epub 2007 May 11
- Johan H. Faber, Daniel Malmodin, Henrik Toft, Anthony Maher, Derek Crockford, Elaine Holmes, Jeremy K. Nicholson, Marc E. Dumas, Dorrit Baunsgaard, Metabonomics in Diabetes Research, Journal of Diabetes Science and Technology, July 2007, Volume 1, Issue 4: Page 549-557
- Tost, J. and I.G. Gut. (2007). DNA methylation analysis by pyrosequencing, Nat. Protoc., 2, 2265-2275.
- Dejeux E, V. Audard, C. Cavard , I. Gut, B. Terris and J. Tost (2007). Rapid identification of promoter hypermethylation in hepatocellular carcinoma by Pyrosequencing of etiologically homogeneous sample pools. J. Mol. Diagn., 9, 510-520.
- Tost, J. and I.G. Gut. (2007). Analysis of gene-specific DNA methylation patterns by the Pyrosequencing™ technology in Pyrosequencing protocols (S. Marsh ed.), Methods Mol. Biol., 373, 89-102.
- Falk, R., Ramström, M., Ståhl, S. & Hober, S. (2007) Approaches for Systematic Proteome Exploration, Biomolecular Engineering, 24, 155-168
- Andersson, P., Jesson, G., Kylberg, G., Ekstrand, G., Thorsen, G. ¨Parallel Nanoliter Microfluidic Analysis System¨. Anal. Chem. 2007; 79(11); 4022-4030.
- *Maher AD, *Smith LM, Cloarec, O, Rantalienen, M, Tang, H, Elliot, P, Stamler, J, Lindon, JC, Holmes, E and Nicholson, JK (2007) Statistical Correlation and Projection Methods for Improved Information Recovery from Diffusion-edited NMR Spectra of Biological Samples Anal Chem, Aug 1;79(15):5682-9.
- Maher, AD, Zirah, SF, Holmes, E and Nicholson, JK (2007) Experimental and Analytical Variation in Human Urine in 1H NMR Spectroscopy-based Metabolic Phenotyping Studies. Anal Chem, Jul 15;79(14):5204-11.
- *Maher, AD, *Vilasi, A, *Cutillas, PR, Zirah, SF, Capasso, G, Norden, AW, Holmes, E, Nicholson, JK and Unwin, RJ (2007) Combined proteomic and metabonomic studies in three genetic forms of the renal Fanconi syndrome. Am J Physiol, Aug;293(2):F456-67.
- Grönwall, C., Sjöberg, A., Ramström, M., Höide´n-Guthenberg, I., Hober, S., Jonasson, P. & Ståhl, S. (2007) Affibody-mediated transferrin depletion for proteomics applications, Biotechnology J, Nov;2(11):1389-98.
- Björling E., Lindskog C., Oksvold P., Linné J., Kampf C., Hober S., Uhlén M. and Pontén F. " A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues" 2007 Oct 3 [Epub ahead of print]
- Paavilainen, L., Wernérus, H., Nilsson, P. Uhlén, M., Hober, S., Wester, K & Pontén, F (2007) Evaluation of mono-specific antibodies: A comparison study with commercial analogues using immunohistochemistry on tissue microarrays, Appl. Immunohistochem. & Molecular Morphology, In press
- Paavilainen, L., Wernérus, H., Nilsson, P., Uhlén, M., Hober, S., Wester, K. and Pontén, F. (2007 in press). "Evaluation of mono-specific antibodies: A comparison study with commercial analogues using immunohistochemistry on tissue microarrays" Applied Immunohistochemistry and Molecular Morphology, in press
- KT Zondervan and LR Cardon. Case-control genetic association studies. I. Study Design. Nature Protocols, in press.
- Berglund, L., Björling, E., Szigyarto, C. A.-K., Persson, A., Ottosson, J., Wernérus, H., Nilsson, P., Sivertsson, Å., Wester, K., Kampf, C., Hober, S., Pontén, F. and Uhlén, M. "Generation of validated antibodies towards the human proteome. submitted
- Ponten, F., Gry, M., Björling, E., Berglund, L., Szigyarto, C. A.-K., Swahn, H. A., Asplund, A., Hober, S., Kampf, C., Nilsson, K., Nilsson, P., Ottosson, J., Persson, A., Werneus, H., Wester, K. and Uhlen, M "Mapping the human proteome - a comprehensive in situ analysis of protein profiles in normal and cancer cells." submitted
- Rene Cortesea, Manuel Krispina, Gunter Weissa, Kurt Berlina, Florian Eckhardt, DNA Methylation profiling of pseudogene / parental gene pairs and two gene families; submitted to Genomics.
| | | | Poster Presentations | - Keystone Symposia “Nuclear Receptor Pathways to Metabolic Regulation” Steamboat springs, US March 25 - April 1, 2007. Kristian Almstrup and Andreas Petri.
- MolPAGE Data Warehouse. Poster presentation. Maria Krestyaninova, Edgars Celms, Martins Opmanis, Karlis Podnieks, Peteris Rucevskis, Andris Zarins, Natalja Kurbatova, Sudeshna Guha Neogi, Juris Viksna, Alvis Brazma, Ugis Sarkans. ISMB, Vienna, July 2007.
| | | | Oral Presentations | - Partner 3 – Susanne Schwonbeck Susanne Schwonbeck, Presentation CNG Atelier “Genomic Tools for Disease Studies and Other Applications “ September 25th, 26th 2006, Paris, France
- Partner 16 - Dominique Langin - The inflammed adipose tissue. Karolinska Insitute (9-10 October 2006 )
- Partner 15 – Mats Ignanas - Miniaturized immunoassays in the development process of therapeutic antibodies. Östereichische Gesellschaft für Biotechnologie, November 27-28, 2006, Vienna, Austria
- Partner 1 - Mark McCarthy - IDF (International Diabetes Federation), Cape Town, December 2006
- Partner 1 - Mark McCarthy – IDEG Satellite to International Diabetes Federation, Stellenbosch, December 2006
- Partner 1 - Mark McCarthy – Paavo Nurmi Symposium, Oulu, Finland, December 2006
- Partner 8 - Maria Krestyaninova - MolPAGE data warehouse – a data integration platform in genomic epidemiology. Workshop on Data Warehouse Technologies in Bioinformatics 2006, 4-6Dec, 2006.
- Partner 8 - Maria Krestyaninova - Building an Informatics Infrastructure for Diabetes Research. Meeting of CCPs, UK Structural Biology consortia, and Molecular Dynamics groups, to discuss potential points of collaboration. 29-30 January 2007, at the EBI, Hinxton, UK.
- Partner 16 - Dominique Langin - Intensive courses Erasmus Socrates COSPI, Graz (12-17 February 2007)
- Partner 1 - Mark McCarthy – Catalan Diabetes Congress, Barcelona, March 2007
- Partner 1 - George Nicholson - Statistical preprocessing of spectral data – lessons from MolPAGE, Metabonomics and proteomics workshop, Pavia, March 2007
- Partner 1 – Chris Holmes - Bayesian methods for detecting genetical biomarkers in NMR and mass spec data, Metabonomics and proteomics workshop, Pavia, March 2007
- Partner 3 – Ivo Gut - Satellite meeting at the “World Immune Regulation Meeting” April 11-15, 2007, Davos, Switzerland
- Partner 1 - Mark McCarthy – European Society for Clinical Investigation, Uppsala, April 2007
- Partner 1 – Chris Holmes - Inferring Copy Number Polymorphisms from Illumina BeadChip SNP genotyping data, 2nd Paris workshop on molecular and statistical genomic epidemiology (13th-16th May 2007)
- Partner 1 - Mark McCarthy - Plenary Session, Human Genome Meeting (HGM2007), Montreal, May 2007
- Partner 1 – Chris Holmes - Multiresolution approaches to curve and image warping, Meeting organised by the American Statistical Society 28th July-2nd August 2007
- Partner 1 - Mark McCarthy – European Lipoprotein Club, Tutzing, Germany, Sept 2007
- Partner 1 - Mark McCarthy – EASD Symposium Speaker, Amsterdam, Sept 2007
- Partner 1 - Mark McCarthy – Irish Society for Genetics, Belfast, Sept 2007
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