Epigenomics
Partners: CNG and Epigenomics AG
DNA methylation occurs naturally on cytosine bases within CpG sequences. It is a frequent occurrence; an estimated 80% of all CpG sites are methylated in mammals. Methylation of cytosines in gene promoters can shut off gene expression either by directly interfering with the binding of transcription factors or by chromatin condensation. Thus the differential methylation of cytosines provides a mechanism to alter genome function and gives rise to distinct patterns specific for different tissue types and disease states. These Methylation Variable Positions (MVPs) are considered epigenetic biomarkers and can be correlated with gene expression and accordingly with the phenotype of many of the most important common and complex human diseases (e.g. T2DM, cancer, arteriosclerosis, rheumatoid arthritis).
WP4 are applying three DNA methylation profiling technology platforms to the analysis of metabolic disease samples from MolPAGE WP1. Differential Methylation Hybridization (DMH) is a microarray based technology that allows for an epigenome-wide analysis of methylation for discovery epigenomics. Specific, selected methylation sites, ‘epigenetic biomarkers’ such as CpG sites in and around the IGF2 and H19 genes on human chromosome 11p15.5, are being analysed by pyrosequencing and using bisulfite DNA sequencing. |